CMakeLists.txt

@@ -27,6 +27,13 @@ set(libpred_sources projects/libpredictor/src/)
 set(libpred_include projects/libpredictor/include/)
 
 include_directories(src)
+include_directories(src/Utils)
+include_directories(src/SgUtils)
+include_directories(src/Distribution)
+include_directories(src/GraphCall)
+include_directories(src/GraphLoop)
+include_directories(src/Transformations/ExpressionSubstitution)
+
 #Sage lib includes
 include_directories(${fdvm_include})
 include_directories(${sage_include_1})
@@ -113,7 +120,13 @@ set(OMEGA src/SageAnalysisTool/OmegaForSage/add-assert.cpp
         src/SageAnalysisTool/set.cpp)
 
 set(PRIV src/PrivateAnalyzer/private_analyzer.cpp
-        src/PrivateAnalyzer/private_analyzer.h)
+        src/PrivateAnalyzer/private_analyzer.h
+        src/PrivateAnalyzer/private_arrays_search.cpp
+        src/PrivateAnalyzer/private_arrays_search.h
+        src/PrivateAnalyzer/range_structures.cpp
+        src/PrivateAnalyzer/range_structures.h
+        src/PrivateAnalyzer/region.cpp
+        src/PrivateAnalyzer/region.h)
 
 set(FDVM ${fdvm_sources}/acc.cpp
          ${fdvm_sources}/acc_across.cpp
@@ -148,40 +161,47 @@ set(PARALLEL_REG src/ParallelizationRegions/ParRegions.cpp
         src/ParallelizationRegions/resolve_par_reg_conflicts.cpp
         src/ParallelizationRegions/resolve_par_reg_conflicts.h)
 
-set(TR_DEAD_CODE src/Transformations/dead_code.cpp
-        src/Transformations/dead_code.h)
-set(TR_CP src/Transformations/checkpoints.cpp
-        src/Transformations/checkpoints.h)
-set(TR_VECTOR src/Transformations/array_assign_to_loop.cpp
-        src/Transformations/array_assign_to_loop.h)
-set(TR_ENDDO_LOOP src/Transformations/enddo_loop_converter.cpp
-        src/Transformations/enddo_loop_converter.h)
-set(TR_LOOP_NEST src/Transformations/loop_transform.cpp
-        src/Transformations/loop_transform.h)
-set(TR_LOOP_COMB src/Transformations/loops_combiner.cpp
-        src/Transformations/loops_combiner.h)
-set(TR_LOOP_SPLIT src/Transformations/loops_splitter.cpp
-        src/Transformations/loops_splitter.h)
-set(TR_LOOP_UNROLL src/Transformations/loops_unrolling.cpp
-        src/Transformations/loops_unrolling.h)     
-set(TR_PRIV_BR src/Transformations/private_arrays_resizing.cpp
-        src/Transformations/private_arrays_resizing.h)
-set(TR_PRIV_DEL src/Transformations/private_removing.cpp
-        src/Transformations/private_removing.h)
-set(TR_SWAP_ARR_DIMS src/Transformations/swap_array_dims.cpp
-        src/Transformations/swap_array_dims.h)
-set(TR_FUNC_DUP src/Transformations/uniq_call_chain_dup.cpp
-        src/Transformations/uniq_call_chain_dup.h)
-set(TR_FUNC_PURE src/Transformations/function_purifying.cpp
-        src/Transformations/function_purifying.h)  
-set(TR_GV src/Transformations/fix_common_blocks.cpp
-        src/Transformations/fix_common_blocks.h)
-set(TR_CONV src/Transformations/convert_to_c.cpp
-        src/Transformations/convert_to_c.h)
-set(TR_IMPLICIT_NONE src/Transformations/set_implicit_none.cpp
-        src/Transformations/set_implicit_none.h)
-set(TR_REPLACE_ARRAYS_IN_IO src/Transformations/replace_dist_arrays_in_io.cpp
-        src/Transformations/replace_dist_arrays_in_io.h)
+set(TR_DEAD_CODE src/Transformations/DeadCodeRemoving/dead_code.cpp
+        src/Transformations/DeadCodeRemoving/dead_code.h)
+set(TR_CP src/Transformations/CheckPoints/checkpoints.cpp
+        src/Transformations/CheckPoints/checkpoints.h)
+set(TR_VECTOR src/Transformations/VectorAssignToLoop/array_assign_to_loop.cpp
+        src/Transformations/VectorAssignToLoop/array_assign_to_loop.h)
+set(TR_ENDDO_LOOP src/Transformations/LoopEndDoConverter/enddo_loop_converter.cpp
+        src/Transformations/LoopEndDoConverter/enddo_loop_converter.h)
+set(TR_LOOP_NEST src/Transformations/LoopNesting/loop_transform.cpp
+        src/Transformations/LoopNesting/loop_transform.h)
+set(TR_LOOP_COMB src/Transformations/LoopCombining/loops_combiner.cpp
+        src/Transformations/LoopCombining/loops_combiner.h)
+set(TR_LOOP_SPLIT src/Transformations/LoopSplitting/loops_splitter.cpp
+        src/Transformations/LoopSplitting/loops_splitter.h)
+set(TR_LOOP_UNROLL src/Transformations/LoopUnrolling/loops_unrolling.cpp
+        src/Transformations/LoopUnrolling/loops_unrolling.h)     
+set(TR_PRIV_BR src/Transformations/PrivateArrayResizing/private_arrays_resizing.cpp
+        src/Transformations/PrivateArrayResizing/private_arrays_resizing.h)
+set(TR_PRIV_DEL src/Transformations/PrivateArrayRemoving/private_removing.cpp
+        src/Transformations/PrivateArrayRemoving/private_removing.h)
+set(TR_SWAP_ARR_DIMS src/Transformations/ArrayDimsSwapping/swap_array_dims.cpp
+        src/Transformations/ArrayDimsSwapping/swap_array_dims.h)
+set(TR_FUNC_DUP src/Transformations/FunctionDuplication/uniq_call_chain_dup.cpp
+        src/Transformations/FunctionDuplication/uniq_call_chain_dup.h)
+set(TR_FUNC_PURE src/Transformations/FunctionPurifying/function_purifying.cpp
+        src/Transformations/FunctionPurifying/function_purifying.h)  
+set(TR_GV src/Transformations/GlobalVariables/fix_common_blocks.cpp
+        src/Transformations/GlobalVariables/fix_common_blocks.h)
+set(TR_CONV src/Transformations/ConvertToC/convert_to_c.cpp
+        src/Transformations/ConvertToC/convert_to_c.h)
+set(TR_IMPLICIT_NONE src/Transformations/SetImplicitNone/set_implicit_none.cpp
+        src/Transformations/SetImplicitNone/set_implicit_none.h)
+set(TR_REPLACE_ARRAYS_IN_IO src/Transformations/ReplaceArraysInIO/replace_dist_arrays_in_io.cpp
+        src/Transformations/ReplaceArraysInIO/replace_dist_arrays_in_io.h)
+set(TR_EXPR_TRANSFORM src/Transformations/ExpressionSubstitution/control_flow_graph_part.cpp
+        src/Transformations/ExpressionSubstitution/expr_transform.cpp
+        src/Transformations/ExpressionSubstitution/expr_transform.h)        
+set(TR_INLINER src/Transformations/FunctionInlining/inliner.cpp
+        src/Transformations/FunctionInlining/inliner.h)
+set(TR_RENAME_SYMBOLS  src/Transformations/RenameSymbols/rename_symbols.cpp
+                    src/Transformations/RenameSymbols/rename_symbols.h)
 
 set(TRANSFORMS 
         ${TR_DEAD_CODE}
@@ -201,7 +221,10 @@ set(TRANSFORMS
         ${TR_CONV}
         ${TR_PRIV_DEL}
         ${TR_IMPLICIT_NONE}
-        ${TR_REPLACE_ARRAYS_IN_IO})
+        ${TR_REPLACE_ARRAYS_IN_IO}
+        ${TR_EXPR_TRANSFORM}
+        ${TR_INLINER}
+        ${TR_RENAME_SYMBOLS})
         
 set(CFG src/CFGraph/IR.cpp
         src/CFGraph/IR.h
@@ -284,10 +307,6 @@ set(DYNA src/DynamicAnalysis/createParallelRegions.cpp
         src/DynamicAnalysis/gcov_info.h
         src/DynamicAnalysis/gCov_parser.cpp
         src/DynamicAnalysis/gCov_parser_func.h)
-
-set(EXPR_TRANSFORM src/ExpressionTransform/control_flow_graph_part.cpp
-        src/ExpressionTransform/expr_transform.cpp
-        src/ExpressionTransform/expr_transform.h)
         
 set(GR_CALL src/GraphCall/graph_calls.cpp
         src/GraphCall/graph_calls.h
@@ -299,18 +318,11 @@ set(GR_LOOP src/GraphLoop/graph_loops_base.cpp
         src/GraphLoop/graph_loops.h
         src/GraphLoop/graph_loops_func.h)
         
-set(INLINER src/Inliner/inliner.cpp
-        src/Inliner/inliner.h)
-        
 set(LOOP_ANALYZER  src/LoopAnalyzer/allocations_prepoc.cpp
         src/LoopAnalyzer/dep_analyzer.cpp        
         src/LoopAnalyzer/loop_analyzer.cpp
         src/LoopAnalyzer/loop_analyzer.h)
 
-set(RENAME_SYMBOLS  src/RenameSymbols/rename_symbols.cpp
-                    src/RenameSymbols/rename_symbols.h)
-
-
 set(MAIN src/Sapfor.cpp
         src/Sapfor.h
         src/SapforData.h
@@ -400,12 +412,9 @@ set(SOURCE_EXE
     ${DISTR}
     ${DVMH_REG}
     ${DYNA}
-    ${EXPR_TRANSFORM}
     ${GR_CALL}
     ${GR_LOOP}
-    ${INLINER}
     ${LOOP_ANALYZER}
-    ${RENAME_SYMBOLS}
     ${TRANSFORMS}
     ${PARALLEL_REG}
     ${PRIV}
@@ -429,7 +438,7 @@ source_group (CFGraph FILES ${CFG})
 source_group (CFGraph\\DataFlow FILES ${DATA_FLOW})
 
 source_group (Transformations\\DeadCodeRemoving FILES ${TR_DEAD_CODE})
-source_group (Transformations\\ExpressionSubstitution FILES ${EXPR_TRANSFORM})
+source_group (Transformations\\ExpressionSubstitution FILES ${TR_EXPR_TRANSFORM})
 source_group (Transformations\\CheckPoints FILES ${TR_CP})
 source_group (Transformations\\LoopEndDoConverter FILES ${TR_ENDDO_LOOP})
 source_group (Transformations\\LoopNesting FILES ${TR_LOOP_NEST})
@@ -437,13 +446,13 @@ source_group (Transformations\\LoopCombining FILES ${TR_LOOP_COMB})
 source_group (Transformations\\LoopSplitting FILES ${TR_LOOP_SPLIT})
 source_group (Transformations\\LoopUnrolling FILES ${TR_LOOP_UNROLL})
 source_group (Transformations\\FunctionDuplication FILES ${TR_FUNC_DUP})
-source_group (Transformations\\FunctionInlining FILES ${INLINER})
+source_group (Transformations\\FunctionInlining FILES ${TR_INLINER})
 source_group (Transformations\\FunctionPurifying FILES ${TR_FUNC_PURE})
 source_group (Transformations\\ArrayDimsSwapping FILES ${TR_SWAP_ARR_DIMS})
 source_group (Transformations\\PrivateArrayResizing FILES ${TR_PRIV_BR})
 source_group (Transformations\\PrivateArrayRemoving FILES ${TR_PRIV_DEL})
 source_group (Transformations\\VectorAssignToLoop FILES ${TR_VECTOR})
-source_group (Transformations\\RenameSymbols FILES ${RENAME_SYMBOLS})
+source_group (Transformations\\RenameSymbols FILES ${TR_RENAME_SYMBOLS})
 source_group (Transformations\\GlobalVariables FILES ${TR_GV})
 source_group (Transformations\\ConvertToC FILES ${TR_CONV})
 source_group (Transformations\\SetImplicitNone FILES ${TR_IMPLICIT_NONE})

src/CFGraph/CFGraph.cpp

@@ -1,5 +1,5 @@
 #define _LEAK_
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <stdlib.h>
 #include <stdio.h>
@@ -8,9 +8,9 @@
 #include <chrono>
 #include <functional>
 
-#include "../Utils/SgUtils.h"
-#include "../Utils/CommonBlock.h"
-#include "../GraphCall/graph_calls.h"
+#include "SgUtils.h"
+#include "CommonBlock.h"
+#include "graph_calls.h"
 
 #include "dvm.h"
 #include "IR.h"

src/CFGraph/DataFlow/backward_data_flow.h

@@ -5,7 +5,7 @@
 #include <set>
 #include <algorithm>
 
-#include "../../Utils/SgUtils.h"
+#include "SgUtils.h"
 #include "../CFGraph.h"
 #include "../IR.h"
 

src/CFGraph/DataFlow/backward_data_flow_impl.h

@@ -5,7 +5,7 @@
 #include <set>
 #include <algorithm>
 
-#include "../../Utils/SgUtils.h"
+#include "SgUtils.h"
 #include "../CFGraph.h"
 #include "../IR.h"
 #include "../RD_subst.h"

src/CFGraph/DataFlow/data_flow.h

@@ -2,7 +2,7 @@
 #include<vector>
 #include<set>
 
-#include "../../Utils/SgUtils.h"
+#include "SgUtils.h"
 #include "../CFGraph.h"
 #include "../IR.h"
 

src/CFGraph/DataFlow/data_flow_impl.h

@@ -4,7 +4,7 @@
 #include<vector>
 #include<set>
 
-#include "../../Utils/SgUtils.h"
+#include "SgUtils.h"
 #include "../CFGraph.h"
 #include "../IR.h"
 

src/CFGraph/IR.cpp

@@ -1,14 +1,14 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <stdlib.h>
 #include <stdio.h>
 #include <vector>
 #include <set>
 
-#include "../Utils/SgUtils.h"
-#include "../Utils/CommonBlock.h"
-#include "../GraphCall/graph_calls.h"
-#include "../ExpressionTransform/expr_transform.h"
+#include "SgUtils.h"
+#include "CommonBlock.h"
+#include "graph_calls.h"
+#include "expr_transform.h"
 
 #include "dvm.h"
 #include "IR.h"
@@ -395,7 +395,7 @@ static SAPFOR::Argument* processExpression(SgExpression* ex, vector<IR_Block*>&
     if (ex)
     {
         const int var = ex->variant();
-        if ((var == VAR_REF || var == CONST_REF || var == LABEL_REF) && !ex->lhs() && !ex->rhs()) // <EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
+        if ((var == VAR_REF || var == CONST_REF || var == LABEL_REF) && !ex->lhs() && !ex->rhs()) // variable reference
         {
             if (var == CONST_REF)
             {
@@ -450,7 +450,7 @@ static SAPFOR::Argument* processExpression(SgExpression* ex, vector<IR_Block*>&
                 return arg1;
 
             auto reg = isLeft ? NULL : createRegister();
-            Instruction* instr = new Instruction(isLeft ? CFG_OP::STORE : CFG_OP::LOAD, arg1, createConstArg(numArgs), isLeft ? isLeft : reg);
+            Instruction* instr = new Instruction(isLeft ? CFG_OP::STORE : CFG_OP::LOAD, arg1, createConstArg(numArgs), isLeft ? isLeft : reg, NULL, ex);
             blocks.push_back(new IR_Block(instr));
             return reg;
         }
@@ -485,7 +485,7 @@ static SAPFOR::Argument* processExpression(SgExpression* ex, vector<IR_Block*>&
             auto arg1 = arrayRef ? arrayRef : createArrayArg(ref, blocks, func, numArgs, commonVars);
 
             auto reg = isLeft ? NULL : createRegister();
-            instr = new Instruction(isLeft ? CFG_OP::STORE : CFG_OP::LOAD, arg1, createConstArg(1), isLeft ? isLeft : reg);
+            instr = new Instruction(isLeft ? CFG_OP::STORE : CFG_OP::LOAD, arg1, createConstArg(1), isLeft ? isLeft : reg, NULL, ex);
             blocks.push_back(new IR_Block(instr));
             return reg;
         }
@@ -602,7 +602,7 @@ static SAPFOR::Argument* processExpression(SgExpression* ex, vector<IR_Block*>&
                 {
                     if (returnReg == NULL)
                     {
-                        Instruction* instr = new Instruction(CFG_OP::LOAD, arg, NULL, reg);
+                        Instruction* instr = new Instruction(CFG_OP::LOAD, arg, NULL, reg, NULL, ex);
                         blocks.push_back(new IR_Block(instr));
                     }
                     else
@@ -1572,7 +1572,7 @@ vector<IR_Block*> buildIR(SgStatement* function, const FuncInfo* func, const vec
     else
         findReturn(0, blocks.size(), blocks, blocks.back()->getNumber());
 
-    // <EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><> GOTO <20> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
+    // adding links by GOTO and jumps
     for (int z = 0; z < blocks.size(); ++z)
     {
         auto op = blocks[z]->getInstruction()->getOperation();
@@ -1592,7 +1592,7 @@ vector<IR_Block*> buildIR(SgStatement* function, const FuncInfo* func, const vec
 
                 blocks[z]->setJump(it->second);
 
-                // <EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD> <20><> <20><><EFBFBD><EFBFBD><EFBFBD> <20><><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD><EFBFBD>
+                // replacing the label with the instruction number
                 arg->setValue(to_string(it->second->getNumber())); 
                 arg->setType(CFG_ARG_TYPE::INSTR);
             }

src/CFGraph/IR.h

@@ -6,8 +6,7 @@
 #include <algorithm>
 
 #include "CFGraph.h"
-#include "../Utils/CommonBlock.h"
-#include "../GraphCall/graph_calls.h"
+#include "CommonBlock.h"
 
 namespace SAPFOR
 {

src/CFGraph/RD_subst.cpp

@@ -8,10 +8,10 @@
 #include <unordered_map>
 #include <unordered_set>
 
-#include "../Utils/SgUtils.h"
-#include "../Utils/CommonBlock.h"
-#include "../GraphCall/graph_calls.h"
-#include "../ExpressionTransform/expr_transform.h"
+#include "SgUtils.h"
+#include "CommonBlock.h"
+#include "graph_calls.h"
+#include "expr_transform.h"
 
 #define PRINT_PROF_INFO 0
 #define DEBUG_CHECKS 0

src/CFGraph/RD_subst.h

@@ -2,9 +2,9 @@
 
 #include<unordered_map>
 
-#include "../Utils/SgUtils.h"
-#include "../Utils/CommonBlock.h"
-#include "../GraphCall/graph_calls.h"
+#include "SgUtils.h"
+#include "CommonBlock.h"
+#include "graph_calls.h"
 
 #include "CFGraph.h"
 #include "IR.h"

src/CFGraph/live_variable_analysis.h

@@ -1,6 +1,6 @@
 #pragma once
 
-#include "../Utils/SgUtils.h"
+#include "SgUtils.h"
 #include "CFGraph.h"
 
 namespace LIVE_VARIABLES

src/CFGraph/private_variables_analysis.cpp

@@ -1,6 +1,6 @@
-#include "../Utils/errors.h"
+#include "errors.h"
 #include "private_variables_analysis.h"
-#include "../GraphLoop/graph_loops.h"
+#include "graph_loops.h"
 #include "../LoopAnalyzer/loop_analyzer.h"
 #include "../SageAnalysisTool/depGraph.h"
 #include "../DirectiveProcessing/directive_parser.h"

src/CFGraph/private_variables_analysis.h

@@ -1,5 +1,5 @@
-#include "../Utils/SgUtils.h"
-#include "../GraphLoop/graph_loops.h"
+#include "SgUtils.h"
+#include "graph_loops.h"
 #include "CFGraph.h"
 
 #include <string>

src/CreateInterTree/CreateInterTree.cpp

@@ -1,7 +1,7 @@
 #include "CreateInterTree.h"
-#include "../Utils/SgUtils.h"
-#include "../Utils/utils.h"
-#include "../GraphCall/graph_calls_func.h"
+#include "SgUtils.h"
+#include "utils.h"
+#include "graph_calls_func.h"
 
 using std::string;
 using std::wstring;

src/CreateInterTree/CreateInterTree.h

@@ -8,7 +8,7 @@
 
 #include "dvm.h"
 
-#include "../GraphLoop/graph_loops_func.h"
+#include "graph_loops_func.h"
 
 struct SpfInterval
 {

src/DirectiveProcessing/directive_analyzer.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <cstdio>
 #include <cstdlib>
@@ -16,9 +16,9 @@
 #include <assert.h>
 
 #include "../Distribution/DvmhDirective.h"
-#include "../GraphLoop/graph_loops.h"
+#include "graph_loops.h"
 #include "directive_analyzer.h"
-#include "../Utils/utils.h"
+#include "utils.h"
 
 using std::vector;
 using std::map;

src/DirectiveProcessing/directive_analyzer.h

@@ -1,6 +1,6 @@
 #pragma once
 
 #include <vector>
-#include "../GraphLoop/graph_loops.h"
+#include "graph_loops.h"
 
 void UniteNestedDirectives(std::vector<LoopGraph*> &loopGraph);

src/DirectiveProcessing/directive_creator.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <cstdio>
 #include <cstdlib>
@@ -15,18 +15,18 @@
 #include "../Distribution/Distribution.h"
 #include "../Distribution/DvmhDirective_func.h"
 
-#include "../Utils/errors.h"
+#include "errors.h"
 #include "../LoopAnalyzer/loop_analyzer.h"
 #include "directive_parser.h"
 #include "directive_creator.h"
-#include "../Utils/SgUtils.h"
+#include "SgUtils.h"
 #include "../Sapfor.h"
-#include "../GraphLoop/graph_loops_func.h"
-#include "../Transformations/loop_transform.h"
-#include "../ExpressionTransform/expr_transform.h"
-#include "../GraphCall/graph_calls_func.h"
+#include "graph_loops_func.h"
+#include "../Transformations/LoopNesting/loop_transform.h"
+#include "expr_transform.h"
+#include "graph_calls_func.h"
 
-#include "../Utils/AstWrapper.h"
+#include "AstWrapper.h"
 
 #define PRINT_DIR_RESULT 0
 

src/DirectiveProcessing/directive_creator.h

@@ -1,9 +1,9 @@
 #pragma once
 
 #include "../Distribution/Distribution.h"
-#include "../Utils/errors.h"
-#include "../GraphLoop/graph_loops.h"
-#include "../Utils/types.h"
+#include "errors.h"
+#include "graph_loops.h"
+#include "types.h"
 
 void createParallelDirectives(const std::map<LoopGraph*, std::map<DIST::Array*, ArrayInfo*>> &loopInfo,
                               const std::vector<ParallelRegion*>& regions, 

src/DirectiveProcessing/directive_creator_base.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <cstdio>
 #include <cstdlib>
@@ -10,9 +10,9 @@
 
 #include "../ParallelizationRegions/ParRegions.h"
 #include "../Distribution/Arrays.h"
-#include "../Transformations/loop_transform.h"
+#include "../Transformations/LoopNesting/loop_transform.h"
 
-#include "../Utils/errors.h"
+#include "errors.h"
 #include "directive_parser.h"
 #include "directive_creator.h"
 

src/DirectiveProcessing/directive_omp_parser.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <cstdio>
 #include <cstdlib>
@@ -9,7 +9,7 @@
 #include "directive_omp_parser.h"
 #include "directive_parser.h"
 
-#include "../Utils/SgUtils.h"
+#include "SgUtils.h"
 
 using std::vector;
 using std::map;

src/DirectiveProcessing/directive_omp_parser.h

@@ -4,7 +4,7 @@
 #include <map>
 #include <vector>
 
-#include "../Utils/errors.h"
+#include "errors.h"
 
 #define SPF_USER_DIR 777
 #define SPF_USER_DIR_COPY 999

src/DirectiveProcessing/directive_parser.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <cstdio>
 #include <cstring>
@@ -12,10 +12,10 @@
 #include <assert.h>
 
 #include "directive_parser.h"
-#include "../Utils/SgUtils.h"
+#include "SgUtils.h"
 #include "../LoopAnalyzer/loop_analyzer.h"
-#include "../Utils/AstWrapper.h"
-#include "../Utils/errors.h"
+#include "AstWrapper.h"
+#include "errors.h"
 
 using std::string;
 using std::vector;

src/DirectiveProcessing/directive_parser.h

@@ -4,8 +4,8 @@
 #include <set>
 #include <map>
 
-#include "../Utils/AstWrapper.h"
-#include "../GraphLoop/graph_loops.h"
+#include "AstWrapper.h"
+#include "graph_loops.h"
 #include "../Distribution/DvmhDirective.h"
 
 struct DvmDirective

src/DirectiveProcessing/insert_directive.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <cstdio>
 #include <cstdlib>
@@ -16,13 +16,13 @@
 #include "../Distribution/Arrays.h"
 #include "../Distribution/Distribution.h"
 #include "../Distribution/DvmhDirective_func.h"
-#include "../GraphLoop/graph_loops_func.h"
-#include "../GraphCall/graph_calls_func.h"
+#include "graph_loops_func.h"
+#include "graph_calls_func.h"
 
-#include "../Utils/errors.h"
+#include "errors.h"
 #include "../LoopAnalyzer/loop_analyzer.h"
 #include "directive_parser.h"
-#include "../Utils/SgUtils.h"
+#include "SgUtils.h"
 #include "../Sapfor.h"
 #include "directive_creator.h"
 #include "insert_directive.h"

src/DirectiveProcessing/remote_access.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <cstdio>
 #include <cstdlib>
@@ -18,13 +18,13 @@
 
 #include "dvm.h"
 #include "../LoopAnalyzer/loop_analyzer.h"
-#include "../Utils/types.h"
-#include "../Utils/errors.h"
-#include "../Utils/SgUtils.h"
+#include "types.h"
+#include "errors.h"
+#include "SgUtils.h"
 #include "../Distribution/Arrays.h"
-#include "../GraphCall/graph_calls.h"
-#include "../GraphCall/graph_calls_func.h"
-#include "../GraphLoop/graph_loops_func.h"
+#include "graph_calls.h"
+#include "graph_calls_func.h"
+#include "graph_loops_func.h"
 #include "remote_access.h"
 
 using std::vector;

src/DirectiveProcessing/remote_access_base.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <cstdio>
 #include <cstdlib>
@@ -17,8 +17,8 @@
 #include <assert.h>
 
 #include "../Distribution/Arrays.h"
-#include "../GraphCall/graph_calls.h"
-#include "../GraphLoop/graph_loops.h"
+#include "graph_calls.h"
+#include "graph_loops.h"
 #include "../ParallelizationRegions/ParRegions.h"
 #include "remote_access.h"
 

src/DirectiveProcessing/shadow.cpp

@@ -1,19 +1,19 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <set>
 #include <map>
 #include <string>
 #include <vector>
 
-#include "../Utils/errors.h"
-#include "../Utils/utils.h"
-#include "../GraphLoop/graph_loops_func.h"
-#include "../GraphCall/graph_calls.h"
-#include "../GraphCall/graph_calls_func.h"
+#include "errors.h"
+#include "utils.h"
+#include "graph_loops_func.h"
+#include "graph_calls.h"
+#include "graph_calls_func.h"
 #include "directive_parser.h"
 #include "../Distribution/DvmhDirective_func.h"
-#include "../Utils/SgUtils.h"
-#include "../ExpressionTransform/expr_transform.h"
+#include "SgUtils.h"
+#include "expr_transform.h"
 
 #include "../CFGraph/CFGraph.h"
 

src/DirectiveProcessing/spf_directive_preproc.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <cstdio>
 #include <cstdlib>
@@ -12,13 +12,13 @@
 
 #include "dvm.h"
 #include "../Sapfor.h"
-#include "../GraphLoop/graph_loops.h"
-#include "../GraphCall/graph_calls_func.h"
+#include "graph_loops.h"
+#include "graph_calls_func.h"
 #include "../SageAnalysisTool/depInterfaceExt.h"
-#include "../Utils/SgUtils.h"
-#include "../Utils/errors.h"
+#include "SgUtils.h"
+#include "errors.h"
 #include "directive_parser.h"
-#include "../ExpressionTransform/expr_transform.h"
+#include "expr_transform.h"
 #include "../LoopAnalyzer/loop_analyzer.h"
 #include "../DirectiveProcessing/directive_omp_parser.h"
 

src/Distribution/Array.cpp

@@ -1,7 +1,7 @@
 #include "Array.h"
-#include "../Utils/errors.h"
-#include "../Utils/utils.h"
-#include "../GraphCall/graph_calls.h"
+#include "errors.h"
+#include "utils.h"
+#include "graph_calls.h"
 
 using namespace std;
 

src/Distribution/Array.h

@@ -7,9 +7,9 @@
 #include <algorithm>
 #include <climits>
 #include "DvmhDirectiveBase.h"
-#include "../Utils/utils.h"
-#include "../Utils/errors.h"
-#include "../Utils/json.hpp"
+#include "utils.h"
+#include "errors.h"
+#include "json.hpp"
 
 class Symbol;
 class Expression;

src/Distribution/ArrayAnalysis.cpp

@@ -1,8 +1,8 @@
 #include "Array.h"
-#include "../Utils/errors.h"
-#include "../Utils/utils.h"
-#include "../GraphCall/graph_calls.h"
-#include "../Utils/SgUtils.h"
+#include "errors.h"
+#include "utils.h"
+#include "graph_calls.h"
+#include "SgUtils.h"
 #include "../DirectiveProcessing/directive_parser.h"
 #include "../DirectiveProcessing/directive_omp_parser.h"
 #include "../LoopAnalyzer/loop_analyzer.h"

src/Distribution/CreateDistributionDirs.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <stdio.h>
 #include <stdlib.h>
@@ -14,9 +14,9 @@
 #include "GraphCSR.h"
 #include "Arrays.h"
 
-#include "../Utils/errors.h"
-#include "../Utils/utils.h"
-#include "../GraphLoop/graph_loops.h"
+#include "errors.h"
+#include "utils.h"
+#include "graph_loops.h"
 
 using std::vector;
 using std::set;

src/Distribution/CreateDistributionDirs.h

@@ -1,7 +1,7 @@
 #pragma once
 
-#include "../GraphLoop/graph_loops.h"
-#include "../Utils/errors.h"
+#include "graph_loops.h"
+#include "errors.h"
 
 void createDistributionDirs(DIST::GraphCSR<int, double, attrType> &reducedG, DIST::Arrays<int> &allArrays, 
                             DataDirective &dataDirectives, std::map<std::string, std::vector<Messages>> &allMessages, 

src/Distribution/Cycle.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <vector>
 #include <algorithm>

src/Distribution/Cycle.h

@@ -3,7 +3,7 @@
 #include <vector>
 #include <algorithm>
 
-#include "../Utils/types.h"
+#include "types.h"
 
 namespace Distribution
 {

src/Distribution/Distribution.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <cstdio>
 #include <cstdlib>
@@ -30,9 +30,9 @@ using namespace std::chrono;
 #include "Arrays.h"
 #include "Array.h"
 #include "Distribution.h"
-#include "../Utils/utils.h"
-#include "../Utils/errors.h"
-#include "../Utils/types.h"
+#include "utils.h"
+#include "errors.h"
+#include "types.h"
 #include "../Distribution/Cycle.h"
 #include "../VisualizerCalls/get_information.h"
 #include "../VisualizerCalls/SendMessage.h"

src/Distribution/DvmhDirective.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <stdio.h>
 #include <stdlib.h>
@@ -7,12 +7,12 @@
 #include <string>
 #include <algorithm>
 
-#include "../Utils/types.h"
+#include "types.h"
 #include "DvmhDirective.h"
-#include "../Utils/errors.h"
-#include "../Utils/SgUtils.h"
+#include "errors.h"
+#include "SgUtils.h"
 #include "../Sapfor.h"
-#include "../GraphCall/graph_calls_func.h"
+#include "graph_calls_func.h"
 
 #include "dvm.h"
 

src/Distribution/DvmhDirective.h

@@ -7,9 +7,9 @@
 
 #include "Array.h"
 #include "DvmhDirectiveBase.h"
-#include "../Utils/AstWrapper.h"
-#include "../Utils/types.h"
-#include "../Utils/utils.h"
+#include "AstWrapper.h"
+#include "types.h"
+#include "utils.h"
 
 extern int sharedMemoryParallelization;
 

src/Distribution/DvmhDirectiveBase.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <stdio.h>
 #include <stdlib.h>
@@ -10,11 +10,11 @@
 #include "../Distribution/Array.h"
 #include "../Distribution/Arrays.h"
 #include "../Distribution/GraphCSR.h"
-#include "../Utils/errors.h"
-#include "../Utils/utils.h"
-#include "../Utils/json.hpp"
+#include "errors.h"
+#include "utils.h"
+#include "json.hpp"
 
-#include "../GraphCall/graph_calls_func.h"
+#include "graph_calls_func.h"
 
 using std::vector;
 using std::tuple;

src/Distribution/DvmhDirectiveBase.h

@@ -3,7 +3,7 @@
 #include <vector>
 #include <string>
 
-#include "../Utils/json.hpp"
+#include "json.hpp"
 
 typedef enum lang : int { LANG_C, LANG_F } language;
 typedef enum dist : int { BLOCK, NONE } distType;

src/Distribution/DvmhDirective_func.h

@@ -4,7 +4,7 @@
 #include <string>
 #include <set>
 #include "dvm.h"
-#include "../Utils/types.h"
+#include "types.h"
 
 SgExpression* createAndSetNext(const int side, const int variant, SgExpression *p);
 std::vector<SgExpression*> genSubscripts(const std::vector<std::pair<int, int>> &shadowRenew, const std::vector<std::pair<int, int>> &shadowRenewShifts);

src/Distribution/GraphCSR.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <algorithm>
 #include <string>
@@ -19,8 +19,8 @@ extern int passDone;
 #include "Cycle.h"
 #include "Arrays.h"
 #include "Array.h"
-#include "../Utils/errors.h"
-#include "../Utils/utils.h"
+#include "errors.h"
+#include "utils.h"
 #include "../VisualizerCalls/get_information.h"
 #include "../VisualizerCalls/SendMessage.h"
 

src/Distribution/GraphCSR.h

@@ -5,7 +5,7 @@
 #include <set>
 #include <tuple>
 
-#include "../Utils/RationalNum.h"
+#include "RationalNum.h"
 
 typedef enum links { RR_link, WR_link, WW_link } LinkType;
 

src/DvmhRegions/DvmhRegion.h

@@ -1,6 +1,6 @@
 #pragma once
 
-#include "../GraphLoop/graph_loops_func.h"
+#include "graph_loops_func.h"
 
 #include <string>
 

src/DvmhRegions/DvmhRegionInserter.cpp

@@ -11,7 +11,7 @@
 #include "DvmhRegionInserter.h"
 #include "DvmhRegions/RegionsMerger.h"
 #include "../VerificationCode/verifications.h"
-#include "../Transformations/function_purifying.h"
+#include "../Transformations/FunctionPurifying/function_purifying.h"
 #include "../LoopAnalyzer/loop_analyzer.h"
 #include "../DirectiveProcessing/directive_parser.h"
 

src/DvmhRegions/DvmhRegionInserter.h

@@ -1,10 +1,10 @@
 #pragma once
 
-#include "../GraphCall/graph_calls_func.h"
-#include "../GraphLoop/graph_loops_func.h"
-#include "../ExpressionTransform/expr_transform.h"
+#include "graph_calls_func.h"
+#include "graph_loops_func.h"
+#include "expr_transform.h"
 #include "../ParallelizationRegions/ParRegions.h"
-#include "../Utils/SgUtils.h"
+#include "SgUtils.h"
 #include "ReadWriteAnalyzer.h"
 #include "DvmhRegion.h"
 

src/DvmhRegions/LoopChecker.h

@@ -1,7 +1,7 @@
 #pragma once
 
-#include "../GraphLoop/graph_loops_func.h"
-#include "../GraphCall/graph_calls_func.h"
+#include "graph_loops_func.h"
+#include "graph_calls_func.h"
 
 #include <vector>
 #include <string>

src/DvmhRegions/ReadWriteAnalyzer.h

@@ -1,7 +1,7 @@
 #pragma once
 
 #include "dvm.h"
-#include "../Utils/SgUtils.h"
+#include "SgUtils.h"
 #include "VarUsages.h"
 #include <set>
 #include <tuple>

src/DvmhRegions/TypedSymbol.h

@@ -1,7 +1,7 @@
 #pragma once
 
 #include "dvm.h"
-#include "../Utils/SgUtils.h"
+#include "SgUtils.h"
 #include <string>
 
 enum class VAR_TYPE { VAR_ARR, VAR_DISTR_ARR, VAR_SCALAR, VAR_ANY, VAR_UNDEFINED };

src/DynamicAnalysis/createParallelRegions.cpp

@@ -5,10 +5,10 @@
 #include "./createParallelRegions.h"
 
 #include "../CreateInterTree/CreateInterTree.h"
-#include "../GraphCall/graph_calls.h"
+#include "graph_calls.h"
 #include "./gcov_info.h"
 #include "./gCov_parser_func.h"
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <map>
 #include <vector>

src/DynamicAnalysis/createParallelRegions.h

@@ -1,10 +1,10 @@
 #pragma once
 
-#include "../Utils/utils.h"
+#include "utils.h"
 
 #include "./gcov_info.h"
 #include "../CreateInterTree/CreateInterTree.h"
-#include "../GraphCall/graph_calls.h"
+#include "graph_calls.h"
 
 #include <map>
 #include <vector>

src/DynamicAnalysis/gCov_parser.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <stdio.h>
 #include <fstream>
@@ -8,7 +8,7 @@
 
 #include "dvm.h"
 #include "gCov_parser_func.h"
-#include "../Utils/SgUtils.h"
+#include "SgUtils.h"
 
 using namespace std;
 

src/DynamicAnalysis/gCov_parser_func.h

@@ -5,7 +5,7 @@
 #include <vector>
 
 #include "dvm.h"
-#include "../Utils/errors.h"
+#include "errors.h"
 #include "gcov_info.h"
 #include "../CreateInterTree/CreateInterTree.h"
 

src/DynamicAnalysis/gcov_info.cpp

@@ -1,10 +1,10 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <iostream>
 #include <map>
 #include <algorithm>
 
-#include "../Utils/errors.h"
+#include "errors.h"
 
 #include "gcov_info.h"
 

src/DynamicAnalysis/gcov_info.h

@@ -5,7 +5,7 @@
 #include <map>
 #include <stdint.h>
 
-#include "../Utils/utils.h"
+#include "utils.h"
 
 //make 'class' - need friend for Gcov_info
 struct Perform

src/GraphCall/graph_calls.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <cstdio>
 #include <cstdlib>
@@ -15,13 +15,13 @@
 #include "graph_calls_func.h"
 
 #include "../CFGraph/CFGraph.h"
-#include "../GraphLoop/graph_loops_func.h"
+#include "graph_loops_func.h"
 #include "../DirectiveProcessing/directive_parser.h"
-#include "../Utils/SgUtils.h"
-#include "../Utils/json.hpp"
+#include "SgUtils.h"
+#include "json.hpp"
 #include "../ParallelizationRegions/ParRegions_func.h"
 #include "../DynamicAnalysis/gCov_parser_func.h"
-#include "../ExpressionTransform/expr_transform.h"
+#include "expr_transform.h"
 #include "../LoopAnalyzer/loop_analyzer.h"
 #include "../VerificationCode/verifications.h"
 

src/GraphCall/graph_calls.h

@@ -3,10 +3,10 @@
 #include <string>
 #include <set>
 
-#include "../Utils/AstWrapper.h"
-#include "../Utils/utils.h"
+#include "AstWrapper.h"
+#include "utils.h"
 #include "../DirectiveProcessing/shadow.h"
-#include "../GraphLoop/graph_loops.h"
+#include "graph_loops.h"
 
 static const char* paramNames[] = 
 { "NONE_T", "ARRAY_T", "STRING_ARRAY_T", "STRING_T", "SCALAR_CHAR_T", "SCALAR_BOOL_T", "SCALAR_SHORT_T", "SCALAR_INT_T", "SCALAR_LONG_INT_T",

src/GraphCall/graph_calls_base.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <cstdio>
 #include <cstdlib>
@@ -10,10 +10,10 @@
 #include <set>
 #include <string>
 
-#include "../Utils/errors.h"
+#include "errors.h"
 #include "graph_calls.h"
 #include "../Distribution/Distribution.h"
-#include "../Utils/utils.h"
+#include "utils.h"
 #include "../ParallelizationRegions/ParRegions.h"
 
 using std::vector;

src/GraphCall/graph_calls_func.h

@@ -5,7 +5,7 @@
 #include <set>
 
 #include "graph_calls.h"
-#include "../GraphLoop/graph_loops.h"
+#include "graph_loops.h"
 #include "../ParallelizationRegions/ParRegions.h"
 #include "Utils/json.hpp"
 

src/GraphLoop/graph_loops.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <cstdio>
 #include <cstdlib>
@@ -12,26 +12,26 @@
 
 #include "dvm.h"
 #include "../Sapfor.h"
-#include "../GraphCall/graph_calls_func.h"
+#include "graph_calls_func.h"
 #include "../ParallelizationRegions/ParRegions_func.h"
-#include "../ExpressionTransform/expr_transform.h"
+#include "expr_transform.h"
 
 #include "../Distribution/GraphCSR.h"
 #include "../Distribution/Arrays.h"
 #include "../Distribution/Distribution.h"
 
 #include "graph_loops.h"
-#include "../Utils/utils.h"
-#include "../Utils/SgUtils.h"
+#include "utils.h"
+#include "SgUtils.h"
 
-#include "../Utils/errors.h"
-#include "../Utils/AstWrapper.h"
-#include "../Utils/json.hpp"
+#include "errors.h"
+#include "AstWrapper.h"
+#include "json.hpp"
 
 #include "../DirectiveProcessing/directive_parser.h"
 #include "../DynamicAnalysis/gCov_parser_func.h"
 
-#include "../Transformations/array_assign_to_loop.h"
+#include "../Transformations/VectorAssignToLoop/array_assign_to_loop.h"
 
 using std::vector;
 using std::map;

src/GraphLoop/graph_loops.h

@@ -5,8 +5,8 @@
 #include <map>
 #include <set>
 
-#include "../Utils/errors.h"
-#include "../Utils/types.h"
+#include "errors.h"
+#include "types.h"
 #include "../Distribution/DvmhDirective.h"
 #include "../Distribution/Distribution.h"
 

src/GraphLoop/graph_loops_base.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <cstdio>
 #include <cstdlib>
@@ -23,8 +23,8 @@ using std::make_pair;
 using std::get;
 
 #include "graph_loops.h"
-#include "../GraphCall/graph_calls_func.h"
-#include "../Utils/errors.h"
+#include "graph_calls_func.h"
+#include "errors.h"
 #include "../Distribution/Distribution.h"
 #include "../Distribution/CreateDistributionDirs.h"
 #include "../ParallelizationRegions/ParRegions.h"

src/LoopAnalyzer/allocations_prepoc.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <cstdio>
 #include <cstdlib>
@@ -8,8 +8,8 @@
 #include <set>
 
 #include "dvm.h"
-#include "../Utils/SgUtils.h"
-#include "../Utils/errors.h"
+#include "SgUtils.h"
+#include "errors.h"
 
 using std::set;
 using std::pair;

src/LoopAnalyzer/dep_analyzer.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <cstdio>
 #include <cstdlib>
@@ -20,8 +20,8 @@
 #include "dvm.h"
 #include "loop_analyzer.h"
 
-#include "../Utils/utils.h"
-#include "../Utils/SgUtils.h"
+#include "utils.h"
+#include "SgUtils.h"
 #include "../ParallelizationRegions/ParRegions_func.h"
 #include "../SageAnalysisTool/depGraph.h"
 #include "../SageAnalysisTool/OmegaForSage/include/lang-interf.h"

src/LoopAnalyzer/loop_analyzer.cpp

@@ -18,7 +18,7 @@
 #include <tuple>
 #include <stack>
 
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #if _WIN32 && NDEBUG && __BOOST
 #include <boost/thread.hpp>
@@ -30,25 +30,25 @@ extern int passDone;
 #include "../Distribution/Arrays.h"
 #include "../ParallelizationRegions/ParRegions.h"
 
-#include "../Utils/errors.h"
+#include "errors.h"
 #include "../DirectiveProcessing/directive_parser.h"
 #include "../DirectiveProcessing/directive_creator.h"
 
-#include "../Utils/SgUtils.h"
-#include "../Utils/AstWrapper.h"
+#include "SgUtils.h"
+#include "AstWrapper.h"
 
-#include "../GraphCall/graph_calls_func.h"
-#include "../GraphLoop/graph_loops_func.h"
+#include "graph_calls_func.h"
+#include "graph_loops_func.h"
 #include "../ParallelizationRegions/ParRegions_func.h"
 #include "../DynamicAnalysis/gCov_parser_func.h"
 
-#include "../ExpressionTransform/expr_transform.h"
+#include "expr_transform.h"
 #include "../SageAnalysisTool/depInterfaceExt.h"
 
 #include "../VisualizerCalls/get_information.h"
 #include "../VisualizerCalls/SendMessage.h"
 
-#include "../Transformations/enddo_loop_converter.h"
+#include "../Transformations/LoopEndDoConverter/enddo_loop_converter.h"
 
 #include "../DirectiveProcessing/remote_access.h"
 #include "../DirectiveProcessing/directive_omp_parser.h"

src/LoopAnalyzer/loop_analyzer.h

@@ -5,12 +5,12 @@
 #include <tuple>
 #include <vector>
 #include <set>
-#include "../GraphLoop/graph_loops.h"
-#include "../GraphCall/graph_calls.h"
+#include "graph_loops.h"
+#include "graph_calls.h"
 #include "../ParallelizationRegions/ParRegions.h"
 #include "../SageAnalysisTool/depInterfaceExt.h"
-#include "../Utils/AstWrapper.h"
-#include "../Utils/SgUtils.h"
+#include "AstWrapper.h"
+#include "SgUtils.h"
 
 #include "dvm.h"
 

src/ParallelizationRegions/ParRegions.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <stdio.h>
 #include <stdlib.h>
@@ -10,12 +10,12 @@
 
 #include "dvm.h"
 #include "ParRegions.h"
-#include "../Utils/utils.h"
-#include "../Utils/SgUtils.h"
-#include "../GraphCall/graph_calls_func.h"
-#include "../GraphLoop/graph_loops.h"
+#include "utils.h"
+#include "SgUtils.h"
+#include "graph_calls_func.h"
+#include "graph_loops.h"
 #include "../Distribution/Distribution.h"
-#include "../ExpressionTransform/expr_transform.h"
+#include "expr_transform.h"
 
 using std::vector;
 using std::string;

src/ParallelizationRegions/ParRegions.h

@@ -9,12 +9,12 @@
 #include "../Distribution/DvmhDirective.h"
 #include "../Distribution/GraphCSR.h"
 #include "../Distribution/Distribution.h"
-#include "../Utils/AstWrapper.h"
+#include "AstWrapper.h"
 
-#include "../Utils/json.hpp"
+#include "json.hpp"
 
 #if __SPF
-#include "../Utils/SgUtils.h"
+#include "SgUtils.h"
 #endif
 
 struct ParallelRegionLines

src/ParallelizationRegions/ParRegions_func.h

@@ -1,8 +1,8 @@
 #pragma once
 
 #include "ParRegions.h"
-#include "../GraphCall/graph_calls.h"
-#include "../GraphLoop/graph_loops.h"
+#include "graph_calls.h"
+#include "graph_loops.h"
 
 void fillRegionLines(SgFile *file, std::vector<ParallelRegion*> &regions, std::vector<Messages>& messagesForFile, std::vector<LoopGraph*> *loops = NULL, std::vector<FuncInfo*> *funcs = NULL);
 void fillRegionLinesStep2(std::vector<ParallelRegion*> &regions, const std::map<std::string, std::vector<FuncInfo*>> &allFuncInfo, std::map<std::string, std::vector<LoopGraph*>> *loopGraph = NULL);

src/ParallelizationRegions/expand_extract_reg.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <map>
 #include <string>

src/ParallelizationRegions/expand_extract_reg.h

@@ -1,7 +1,7 @@
 #pragma once
 
 #include "ParRegions.h"
-#include "../Utils/SgUtils.h"
-#include "../Utils/errors.h"
+#include "SgUtils.h"
+#include "errors.h"
 
 bool expandExtractReg(const std::string &fileName, const int startLine, const int endLine, const std::vector<ParallelRegion*> &regions, std::vector<Messages> &messagesForFile, const bool toDelete = false);

src/ParallelizationRegions/resolve_par_reg_conflicts.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <string>
 #include <vector>
@@ -11,14 +11,14 @@
 #include "ParRegions_func.h"
 #include "resolve_par_reg_conflicts.h"
 
-#include "../GraphCall/graph_calls_func.h"
-#include "../GraphLoop/graph_loops_func.h"
+#include "graph_calls_func.h"
+#include "graph_loops_func.h"
 #include "../LoopAnalyzer/loop_analyzer.h"
 #include "../DirectiveProcessing/directive_creator.h"
 #include "../DirectiveProcessing/insert_directive.h"
-#include "../Utils/SgUtils.h"
-#include "../ExpressionTransform/expr_transform.h"
-#include "../Transformations/function_purifying.h"
+#include "SgUtils.h"
+#include "expr_transform.h"
+#include "../Transformations/FunctionPurifying/function_purifying.h"
 
 using std::map;
 using std::pair;

src/ParallelizationRegions/resolve_par_reg_conflicts.h

@@ -1,9 +1,9 @@
 #pragma once
 
 #include "ParRegions.h"
-#include "../Utils/SgUtils.h"
-#include "../Utils/errors.h"
-#include "../GraphCall/graph_calls.h"
+#include "SgUtils.h"
+#include "errors.h"
+#include "graph_calls.h"
 
 void fillRegionIntervals(std::vector<ParallelRegion*> &regions);
 void fillRegionArrays(std::vector<ParallelRegion*> &regions, const std::map<std::string, std::vector<FuncInfo*>> &allFuncInfo, const std::map<std::string, CommonBlock*> &commonBlocks);

src/Predictor/PredictScheme.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <cstdio>
 #include <cstdlib>
@@ -16,11 +16,11 @@
 #include "../DynamicAnalysis/gcov_info.h"
 #include "../DynamicAnalysis/gCov_parser_func.h"
 #include "PredictScheme.h"
-#include "../Utils/SgUtils.h"
+#include "SgUtils.h"
 #include "../DirectiveProcessing/directive_parser.h"
 #include "../Distribution/DvmhDirective.h"
-#include "../GraphLoop/graph_loops_func.h"
-#include "../ExpressionTransform/expr_transform.h"
+#include "graph_loops_func.h"
+#include "expr_transform.h"
 #include "../LoopAnalyzer/loop_analyzer.h"
 #include "../CFGraph/CFGraph.h"
 

src/Predictor/PredictScheme.h

@@ -1,8 +1,8 @@
 #pragma once
 #include <vector>
 #include "dvm.h"
-#include "../GraphCall/graph_calls.h"
-#include "../Utils/json.hpp"
+#include "graph_calls.h"
+#include "json.hpp"
 
 class ParallelStats
 {

src/PrivateAnalyzer/private_analyzer.cpp

@@ -1,5 +1,5 @@
 #define _LEAK_
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <cstdio>
 #include <cstring>
@@ -9,7 +9,7 @@
 #include <vector>
 #include <fstream>
 
-#include "../GraphCall/graph_calls.h"
+#include "graph_calls.h"
 #include "private_analyzer.h"
 #include "dvm.h"
 #include "../CFGraph/CFGraph.h"

src/PrivateAnalyzer/private_analyzer.h

@@ -3,7 +3,7 @@
 #include <vector>
 
 #include "dvm.h"
-#include "../GraphCall/graph_calls.h"
+#include "graph_calls.h"
 
 extern void Private_Vars_Analyzer(SgStatement* start);
 void PrivateAnalyzer(SgFile *file, std::vector<FuncInfo*> &funcs);

src/PrivateAnalyzer/private_arrays_search.cpp

@@ -0,0 +1,141 @@
+#include <map>
+#include <unordered_set>
+#include <unordered_map>
+#include <vector>
+#include <queue>
+#include <numeric>
+#include <iostream>
+
+#include "private_arrays_search.h"
+#include "range_structures.h"
+#include "region.h"
+#include "SgUtils.h"
+#include "graph_loops.h"
+#include "../CFGraph/CFGraph.h"
+
+using namespace std;
+
+void Collapse(Region* region)
+{
+    if (region->getBasickBlocks().empty())
+        return;
+
+    for (auto& [arrayName, arrayRanges] : region->getHeader()->array_out)
+    {
+        for (Region* byBlock : region->getBasickBlocks())
+        {
+            AccessingSet intersection = byBlock->array_def[arrayName].Intersect(arrayRanges);
+            region->array_def[arrayName] = region->array_def[arrayName].Union(intersection);
+        }
+    }
+
+    for (auto& byBlock : region->getBasickBlocks()) 
+    {
+        for (auto& [arrayName, arrayRanges] : byBlock->array_use)
+        {
+            AccessingSet diff = byBlock->array_use[arrayName].Diff(byBlock->array_in[arrayName]);
+            region->array_use[arrayName] = region->array_use[arrayName].Union(diff);
+        }
+    }
+    ArrayAccessingIndexes useUnion;
+    for (auto& byBlock : region->getBasickBlocks())
+        for (auto& [arrayName, arrayRanges] : byBlock->array_use)
+            useUnion[arrayName] = useUnion[arrayName].Union(byBlock->array_use[arrayName]);
+
+    for (auto& [arrayName, arrayRanges] : useUnion)
+        region->array_priv[arrayName] = useUnion[arrayName].Diff(region->array_use[arrayName]);
+    
+    for (Region* prevBlock : region->getHeader()->getPrevRegions()) 
+        prevBlock->replaceInNextRegions(region, region->getHeader());
+    
+    for (Region* nextBlock : region->getHeader()->getNextRegions())
+        nextBlock->replaceInPrevRegions(region, region->getHeader());
+}
+
+static void SolveDataFlowIteratively(Region* DFG) 
+{
+    unordered_set<Region*> worklist(DFG->getBasickBlocks());
+    do
+    {
+        Region* b = *worklist.begin();
+        ArrayAccessingIndexes newIn;
+        bool flagFirst = true;
+        for (Region* prevBlock : b->getPrevRegions())
+        {
+            if (flagFirst)
+            {
+                newIn = prevBlock->array_out;
+                flagFirst = false;
+            }
+            else
+            {
+                if (prevBlock->array_out.empty())
+                {
+                    newIn.clear();
+                    continue;
+                }
+                for (const auto& [arrayName, accessSet] : prevBlock->array_out)
+                {
+                    if (newIn.find(arrayName) != newIn.end())
+                        newIn[arrayName] = newIn[arrayName].Intersect(accessSet);                    
+                    else
+                        newIn[arrayName] = AccessingSet();
+                }
+            }
+        }
+
+        b->array_in = move(newIn);
+        ArrayAccessingIndexes newOut;
+        if (b->array_def.empty())        
+            newOut = b->array_in;
+        else if (b->array_in.empty())
+            newOut = b->array_def;
+        else
+        {
+            for (auto& [arrayName, accessSet] : b->array_def)
+            {
+                if (newOut.find(arrayName) != newOut.end())
+                    newOut[arrayName] = b->array_def[arrayName].Union(b->array_in[arrayName]);
+                else
+                    newOut[arrayName] = accessSet;
+            }
+        }
+
+        /* can not differ */
+        if (newOut != b->array_out) 
+            b->array_out = newOut;
+        else
+            worklist.erase(b);
+    } 
+    while (!worklist.empty());
+}
+
+static void SolveDataFlow(Region* DFG)
+{
+    if (!DFG)
+        return;
+
+    SolveDataFlowIteratively(DFG);
+    for (Region* subRegion : DFG->getSubRegions())
+        SolveDataFlow(subRegion);
+    Collapse(DFG);
+}
+
+map<LoopGraph*, ArrayAccessingIndexes>  FindPrivateArrays(map<string, vector<LoopGraph*>> &loopGraph, map<FuncInfo*, vector<SAPFOR::BasicBlock*>>& FullIR)
+{  
+    map<LoopGraph*, ArrayAccessingIndexes> result;
+    for (const auto& [loopName, loops] : loopGraph)
+    {
+        for (const auto& loop : loops)
+        {
+            for (const auto& [funcInfo, blocks]: FullIR)
+            {   
+                Region* loopRegion = new Region(loop, blocks);
+                SolveDataFlow(loopRegion);
+                result[loop] = loopRegion->array_priv;
+                delete(loopRegion);
+            }
+        }
+    }
+    return result;
+}

src/PrivateAnalyzer/private_arrays_search.h

@@ -0,0 +1,14 @@
+#pragma once
+
+#include <vector>
+#include <map>
+#include <unordered_set>
+
+#include "range_structures.h"
+#include "region.h"
+#include "graph_loops.h"
+#include "../CFGraph/CFGraph.h"
+
+void Collapse(Region* region);
+std::map<LoopGraph*, ArrayAccessingIndexes> FindPrivateArrays(std::map<std::string, std::vector<LoopGraph*>>& loopGraph, std::map<FuncInfo*, std::vector<SAPFOR::BasicBlock*>>& FullIR);
+std::pair<SAPFOR::BasicBlock*, std::unordered_set<SAPFOR::BasicBlock*>> GetBasicBlocksForLoop(const LoopGraph* loop, const std::vector<SAPFOR::BasicBlock*> blocks);

src/PrivateAnalyzer/range_structures.cpp

@@ -0,0 +1,293 @@
+#include <vector>
+#include <map>
+#include <unordered_set>
+#include <string>
+
+#include "utils.h"
+#include "range_structures.h"
+
+using namespace std;
+
+static vector<uint64_t> FindParticularSolution(const ArrayDimension& dim1, const ArrayDimension& dim2)
+{
+    for (uint64_t i = 0; i < dim1.tripCount; i++)
+    {
+        uint64_t leftPart = dim1.start + i * dim1.step;
+        for (uint64_t j = 0; j < dim2.tripCount; j++)
+        {
+            uint64_t rightPart = dim2.start + j * dim2.step;
+            if (leftPart == rightPart)
+                return { i, j };
+        }
+    }
+    return {};
+}
+
+/* dim1 /\ dim2 */
+static ArrayDimension* DimensionIntersection(const ArrayDimension& dim1, const ArrayDimension& dim2)
+{
+    vector<uint64_t> partSolution = FindParticularSolution(dim1, dim2);
+    if (partSolution.empty())
+        return NULL;
+    
+    int64_t x0 = partSolution[0], y0 = partSolution[1];
+    /* x = x_0 + c * t */
+    /* y = y_0 + d * t */
+    int64_t c = dim2.step / gcd(dim1.step, dim2.step);
+    int64_t d = dim1.step / gcd(dim1.step, dim2.step);
+    int64_t tXMin, tXMax, tYMin, tYMax;
+    tXMin = -x0 / c;
+    tXMax = (dim1.tripCount - 1 - x0) / c;
+    tYMin = -y0 / d;
+    tYMax = (dim2.tripCount - 1 - y0) / d;
+    int64_t tMin = max(tXMin, tYMin);
+    uint64_t tMax = min(tXMax, tYMax);
+    if (tMin > tMax)
+        return NULL;
+    
+    uint64_t start3 = dim1.start + x0 * dim1.step;
+    uint64_t step3 = c * dim1.step;
+    ArrayDimension* result = new(ArrayDimension){ start3, step3, tMax + 1 };
+    return result;
+}
+
+/* dim1 / dim2 */
+static vector<ArrayDimension> DimensionDifference(const ArrayDimension& dim1, const ArrayDimension& dim2)
+{
+    ArrayDimension* intersection = DimensionIntersection(dim1, dim2);
+    if (!intersection)
+        return { dim1 };
+    
+    vector<ArrayDimension> result;
+    /* add the part before intersection */
+    if (dim1.start < intersection->start)    
+        result.push_back({ dim1.start, dim1.step, (intersection->start - dim1.start) / dim1.step });
+    
+    /* add the parts between intersection steps */
+    uint64_t start = (intersection->start - dim1.start) / dim1.step;
+    uint64_t interValue = intersection->start;
+    for (int64_t i = start; dim1.start + i * dim1.step <= intersection->start + intersection->step * (intersection->tripCount - 1); i++)
+    {
+        uint64_t centerValue = dim1.start + i * dim1.step;
+        if (centerValue == interValue)
+        {
+            if (i - start > 1)
+            {
+                result.push_back({ dim1.start + (start + 1) * dim1.step, dim1.step, i - start - 1 });
+                start = i;
+            }
+            interValue += intersection->step;
+        }
+    }
+    /* add the part after intersection */
+    if (intersection->start + intersection->step * (intersection->tripCount - 1) < dim1.start + dim1.step * (dim1.tripCount - 1))
+    {
+        /* first value after intersection */
+        uint64_t right_start = intersection->start + intersection->step * (intersection->tripCount - 1) + dim1.step;
+        uint64_t tripCount = (dim1.start + dim1.step * dim1.tripCount - right_start) / dim1.step;
+        result.push_back({ right_start, dim1.step, tripCount });
+    }
+    delete(intersection);
+    return result;
+}
+
+
+static vector<ArrayDimension> DimensionUnion(const ArrayDimension& dim1, const ArrayDimension& dim2)
+{
+    vector<ArrayDimension> res;
+    ArrayDimension* inter = DimensionIntersection(dim1, dim2);
+    if (!inter)
+        return { dim1, dim2 };
+
+    res.push_back(*inter);
+    delete(inter);
+
+    vector<ArrayDimension> diff1, diff2;
+    diff1 = DimensionDifference(dim1, dim2);
+    diff2 = DimensionDifference(dim2, dim1);
+    res.insert(res.end(), diff1.begin(), diff1.end());
+    res.insert(res.end(), diff2.begin(), diff2.end());
+    return res;
+}
+
+static vector<ArrayDimension> ElementsIntersection(const vector<ArrayDimension>& firstElement, const vector<ArrayDimension>& secondElement)
+{
+    if (firstElement.empty() || secondElement.empty())
+        return {};
+    
+    size_t dimAmount = firstElement.size();
+    /* check if there is no intersecction */
+    for (size_t i = 0; i < dimAmount; i++)
+        if (FindParticularSolution(firstElement[i], secondElement[i]).empty())
+            return {};
+
+    vector<ArrayDimension> result(dimAmount);
+    for (size_t i = 0; i < dimAmount; i++)
+    {
+        ArrayDimension* resPtr = DimensionIntersection(firstElement[i], secondElement[i]);
+        if (resPtr)
+            result[i] = *resPtr;
+        else
+            return {};
+
+    }
+    return result;
+}
+
+static vector<vector<ArrayDimension>> ElementsDifference(const vector<ArrayDimension>& firstElement,
+    const vector<ArrayDimension>& secondElement)
+{
+    if (firstElement.empty() || secondElement.empty())
+        return {};
+    
+    vector<ArrayDimension> intersection = ElementsIntersection(firstElement, secondElement);
+    vector<vector<ArrayDimension>> result;
+    if (intersection.empty())
+        return { firstElement };
+    
+    for (int i = 0; i < firstElement.size(); i++)
+    {
+        auto dimDiff = DimensionDifference(firstElement[i], secondElement[i]);
+        if (!dimDiff.empty())
+        {
+            vector<ArrayDimension> firstCopy = firstElement;
+            for (const auto& range : dimDiff)
+            {
+                firstCopy[i] = range;
+                result.push_back(firstCopy);
+            }
+        }
+    }
+    return result;
+}
+
+static void ElementsUnion(const vector<ArrayDimension>& firstElement, const vector<ArrayDimension>& secondElement,
+    vector<vector<ArrayDimension>>& lc, vector<vector<ArrayDimension>>& rc,
+    vector<ArrayDimension>& intersection)
+{
+    /* lc(rc) is a set of ranges, which only exist in first(second) element*/
+    intersection = ElementsIntersection(firstElement, secondElement);
+    lc = ElementsDifference(firstElement, intersection);
+    rc = ElementsDifference(secondElement, intersection);
+}
+
+void AccessingSet::FindUncovered(const vector<ArrayDimension>& element, vector<vector<ArrayDimension>>& result) const {
+    vector<vector<ArrayDimension>> newTails;
+    result.push_back(element);
+    for (const auto& currentElement : allElements)
+    {
+        for (const auto& tailLoc : result)
+        {
+            auto intersection = ElementsIntersection(tailLoc, currentElement);
+            auto diff = ElementsDifference(tailLoc, intersection);
+            if (!diff.empty()) {
+                newTails.insert(newTails.end(), diff.begin(), diff.end());
+            }
+        }
+        result = newTails;
+        newTails.clear();
+    }
+}
+
+bool AccessingSet::ContainsElement(const vector<ArrayDimension>& element) const
+{
+    vector<vector<ArrayDimension>> tails;
+    FindUncovered(element, tails);
+    return !tails.empty();
+}
+
+void AccessingSet::FindCoveredBy(const vector<ArrayDimension>& element, vector<vector<ArrayDimension>>& result) const
+{
+    for (const auto& currentElement : allElements)
+    {
+        auto intersection = ElementsIntersection(element, currentElement);
+        if (!intersection.empty())
+            result.push_back(intersection);
+    }
+}
+
+vector<vector<ArrayDimension>> AccessingSet::GetElements() const { return allElements; }
+
+void AccessingSet::Insert(const vector<ArrayDimension>& element)
+{
+    vector<vector<ArrayDimension>> tails;
+    FindUncovered(element, tails);
+    allElements.insert(allElements.end(), tails.begin(), tails.end());
+}
+
+AccessingSet AccessingSet::Union(const AccessingSet& source) {
+    AccessingSet result;
+    for (auto& element : source.GetElements())
+        result.Insert(element);
+
+    for (auto& element : allElements)
+        result.Insert(element);
+    return result;
+}
+
+AccessingSet AccessingSet::Intersect(const AccessingSet& secondSet) const
+{
+    vector<vector<ArrayDimension>> result;
+    if (secondSet.GetElements().empty() || this->allElements.empty())
+        return AccessingSet(result);
+
+    for (const auto& element : allElements)
+    {
+        if (secondSet.ContainsElement(element))
+            result.push_back(element);
+        else
+        {
+            vector<vector<ArrayDimension>> coveredBy;
+            secondSet.FindCoveredBy(element, coveredBy);
+            if (!coveredBy.empty())
+                result.insert(result.end(), coveredBy.begin(), coveredBy.end());
+        }
+    }
+
+    return AccessingSet(result);
+}
+
+AccessingSet AccessingSet::Diff(const AccessingSet& secondSet) const
+{
+    if (secondSet.GetElements().empty() || allElements.empty())
+        return *this;
+
+    AccessingSet intersection = this->Intersect(secondSet);
+    AccessingSet uncovered = *this;
+    vector<vector<ArrayDimension>> result;
+    for (const auto& element : intersection.GetElements())
+    {
+        vector<vector<ArrayDimension>> current_uncovered;
+        uncovered.FindUncovered(element, current_uncovered);
+        uncovered = AccessingSet(current_uncovered);
+    }
+    return uncovered;
+}
+
+bool operator!=(const ArrayDimension& lhs, const ArrayDimension& rhs)
+{
+    return !(lhs.start == rhs.start && lhs.step == rhs.step && lhs.tripCount == rhs.tripCount);
+}
+
+
+bool operator!=(const AccessingSet& lhs, const AccessingSet& rhs)
+{
+    for (size_t i = 0; i < lhs.allElements.size(); i++)
+        for (size_t j = 0; j < lhs.allElements[i].size(); j++)
+            if (lhs.allElements[i][j] != rhs.allElements[i][j])
+                return true;
+
+    return false;
+}
+
+bool operator!=(const ArrayAccessingIndexes& lhs, const ArrayAccessingIndexes& rhs)
+{
+    if (lhs.size() != rhs.size())
+        return true;
+
+    for (auto& [key, value] : lhs)
+        if (rhs.find(key) == rhs.end())
+            return true;
+
+    return false;
+}

src/PrivateAnalyzer/range_structures.h

@@ -0,0 +1,37 @@
+#pragma once
+
+#include <vector>
+#include <map>
+#include <unordered_set>
+#include <string>
+#include <cstdint>
+
+struct ArrayDimension
+{
+    uint64_t start, step, tripCount;
+};
+
+class AccessingSet {
+private:
+    std::vector<std::vector<ArrayDimension>> allElements;
+
+public:
+    AccessingSet(std::vector<std::vector<ArrayDimension>> input) : allElements(input) {};
+    AccessingSet() {};
+    AccessingSet(const AccessingSet& a) { allElements = a.GetElements(); };
+    std::vector<std::vector<ArrayDimension>> GetElements() const;
+    void Insert(const std::vector<ArrayDimension>& element);
+    AccessingSet Union(const AccessingSet& source);
+    AccessingSet Intersect(const AccessingSet& secondSet) const;
+    AccessingSet Diff(const AccessingSet& secondSet) const;
+    bool ContainsElement(const std::vector<ArrayDimension>& element) const;
+    void FindCoveredBy(const std::vector<ArrayDimension>& element, std::vector<std::vector<ArrayDimension>>& result) const;
+    void FindUncovered(const std::vector<ArrayDimension>& element, std::vector<std::vector<ArrayDimension>>& result) const;
+    friend bool operator!=(const AccessingSet& lhs, const AccessingSet& rhs);
+};
+
+using ArrayAccessingIndexes = std::map<std::string, AccessingSet>;
+
+bool operator!=(const ArrayDimension& lhs, const ArrayDimension& rhs);
+bool operator!=(const AccessingSet& lhs, const AccessingSet& rhs);
+bool operator!=(const ArrayAccessingIndexes& lhs, const ArrayAccessingIndexes& rhs);

src/PrivateAnalyzer/region.cpp

@@ -0,0 +1,251 @@
+#include<vector>
+#include<map>
+#include<unordered_set>
+#include<unordered_map>
+#include<string>
+#include <numeric>
+
+#include "range_structures.h"
+#include "region.h"
+
+#include "SgUtils.h"
+
+using namespace std;
+
+static bool isParentStmt(SgStatement* stmt, SgStatement* parent)
+{
+    for (; stmt; stmt = stmt->controlParent())
+        if (stmt == parent)
+            return true;
+
+    return false;
+}
+
+/*returns head block and loop*/
+pair<SAPFOR::BasicBlock*, unordered_set<SAPFOR::BasicBlock*>> GetBasicBlocksForLoop(const LoopGraph* loop, const vector<SAPFOR::BasicBlock*> blocks)
+{
+    unordered_set<SAPFOR::BasicBlock*> block_loop;
+    SAPFOR::BasicBlock* head_block = nullptr;
+    auto loop_operator = loop->loop->GetOriginal();
+    for (const auto& block : blocks)
+    {
+        if (!block || (block->getInstructions().size() == 0))
+            continue;
+
+        SgStatement* first = block->getInstructions().front()->getInstruction()->getOperator();
+        SgStatement* last = block->getInstructions().back()->getInstruction()->getOperator();
+        if (isParentStmt(first, loop_operator) && isParentStmt(last, loop_operator))
+        {
+            block_loop.insert(block);
+
+            if ((!head_block) && (first == loop_operator) && (last == loop_operator) &&
+                (block->getInstructions().size() == 2) &&
+                (block->getInstructions().back()->getInstruction()->getOperation() == SAPFOR::CFG_OP::JUMP_IF))
+            {
+                head_block = block;
+            }
+
+        }
+    }
+    return { head_block, block_loop };
+}
+
+static void BuildLoopIndex(map<string, LoopGraph*>& loopForIndex, LoopGraph* loop) {
+    string index = loop->loopSymbol;
+    loopForIndex[index] = loop;
+
+    for (const auto& childLoop : loop->children)
+        BuildLoopIndex(loopForIndex, childLoop);
+}
+
+static string FindIndexName(int pos, SAPFOR::BasicBlock* block, map<string, LoopGraph*>& loopForIndex) {
+    unordered_set<SAPFOR::Argument*> args = { block->getInstructions()[pos]->getInstruction()->getArg1() };
+
+    for (int i = pos - 1; i >= 0; i--) 
+    {
+        SAPFOR::Argument* res = block->getInstructions()[i]->getInstruction()->getResult();
+        if (res && args.find(res) != args.end()) 
+        {
+            SAPFOR::Argument* arg1 = block->getInstructions()[i]->getInstruction()->getArg1();
+            SAPFOR::Argument* arg2 = block->getInstructions()[i]->getInstruction()->getArg2();
+            if (arg1) 
+            {
+                string name = arg1->getValue();
+                int idx = name.find('%');
+                if (idx != -1 && loopForIndex.find(name.substr(idx + 1)) != loopForIndex.end())
+                    return name.substr(idx + 1);
+                else
+                    args.insert(arg1);
+            }
+
+            if (arg2)
+            {
+                string name = arg2->getValue();
+                int idx = name.find('%');
+                if (idx != -1 && loopForIndex.find(name.substr(idx + 1)) != loopForIndex.end())
+                    return name.substr(idx + 1);
+                else
+                    args.insert(arg2);
+            }
+        }
+    }
+    return "";
+}
+
+static int GetDefUseArray(SAPFOR::BasicBlock* block, LoopGraph* loop, ArrayAccessingIndexes& def, ArrayAccessingIndexes& use) {
+    auto instructions = block->getInstructions();
+    map<string, LoopGraph*> loopForIndex;
+    BuildLoopIndex(loopForIndex, loop);
+    for (int i = 0; i < instructions.size(); i++)
+    {
+        auto instruction = instructions[i];
+        if (!instruction->getInstruction()->getArg1())
+            continue;
+
+        auto operation = instruction->getInstruction()->getOperation();
+        auto type = instruction->getInstruction()->getArg1()->getType();
+        if ((operation == SAPFOR::CFG_OP::STORE || operation == SAPFOR::CFG_OP::LOAD) && type == SAPFOR::CFG_ARG_TYPE::ARRAY)
+        {
+            vector<SAPFOR::Argument*> index_vars;
+            vector<int> refPos;
+            string array_name;
+            if (operation == SAPFOR::CFG_OP::STORE)
+                array_name = instruction->getInstruction()->getArg1()->getValue();            
+            else
+                array_name = instruction->getInstruction()->getArg2()->getValue();
+
+            int j = i - 1;
+            while (j >= 0 && instructions[j]->getInstruction()->getOperation() == SAPFOR::CFG_OP::REF)
+            {
+                index_vars.push_back(instructions[j]->getInstruction()->getArg1());
+                refPos.push_back(j);
+                j--;
+            }
+
+            /*to choose correct dimension*/
+            int n = index_vars.size();
+            vector<ArrayDimension> accessPoint(n);
+
+            auto* ref = isSgArrayRefExp(instruction->getInstruction()->getExpression());
+            vector<pair<int, int>> coefsForDims;
+            for (int i = 0; ref && i < ref->numberOfSubscripts(); ++i)
+            {
+                const vector<int*>& coefs = getAttributes<SgExpression*, int*>(ref->subscript(i), set<int>{ INT_VAL });
+                if (coefs.size() == 1)
+                {
+                    const pair<int, int> coef(coefs[0][0], coefs[0][1]);
+                    coefsForDims.push_back(coef);
+                }
+
+            }
+
+            if(coefsForDims.empty())
+                printInternalError(convertFileName(__FILE__).c_str(), __LINE__);
+
+            while (!index_vars.empty())
+            {
+                auto var = index_vars.back();
+                int currentVarPos = refPos.back();
+                pair<int, int> currentCoefs = coefsForDims.back();
+                ArrayDimension current_dim;
+                if (var->getType() == SAPFOR::CFG_ARG_TYPE::CONST)
+                    current_dim = { stoul(var->getValue()), 1, 1 };
+                else
+                {
+                    string name, full_name = var->getValue();
+                    int pos = full_name.find('%');
+                    LoopGraph* currentLoop;
+                    if (pos != -1) 
+                    {
+                        name = full_name.substr(pos + 1);
+                        if (loopForIndex.find(name) != loopForIndex.end())
+                            currentLoop = loopForIndex[name];                        
+                        else
+                            return -1;
+                    }
+                    else 
+                    {
+                        name = FindIndexName(currentVarPos, block, loopForIndex);
+                        if (name == "")
+                            return -1;
+
+                        if (loopForIndex.find(name) != loopForIndex.end())
+                            currentLoop = loopForIndex[name];                        
+                        else
+                            return -1;
+                    }
+
+                    uint64_t start = currentLoop->startVal * currentCoefs.first + currentCoefs.second;
+                    uint64_t step = currentCoefs.first;
+                    current_dim = { start, step, (uint64_t)currentLoop->calculatedCountOfIters };
+                }
+
+                accessPoint[n - index_vars.size()] = current_dim;
+                index_vars.pop_back();
+                refPos.pop_back();
+                coefsForDims.pop_back();
+            }
+
+            if (operation == SAPFOR::CFG_OP::STORE)            
+                def[array_name].Insert(accessPoint);
+            else
+                use[array_name].Insert(accessPoint);
+        }
+    }
+    return 0;
+
+}
+
+static void SetConnections(unordered_map<SAPFOR::BasicBlock*, Region*>& bbToRegion, const unordered_set<SAPFOR::BasicBlock*>& blockSet)
+{
+    for (SAPFOR::BasicBlock* block : blockSet)
+    {
+        for (SAPFOR::BasicBlock* nextBlock : block->getNext())
+            if (bbToRegion.find(nextBlock) != bbToRegion.end())
+                bbToRegion[block]->addNextRegion(bbToRegion[nextBlock]);
+         
+        for (SAPFOR::BasicBlock* prevBlock : block->getPrev())
+            if (bbToRegion.find(prevBlock) != bbToRegion.end())
+                bbToRegion[block]->addPrevRegion(bbToRegion[prevBlock]);
+    }
+}
+
+static Region* CreateSubRegion(LoopGraph* loop, const vector<SAPFOR::BasicBlock*>& Blocks, const unordered_map<SAPFOR::BasicBlock*, Region*>& bbToRegion)
+{
+    Region* region = new Region;
+    auto [header, blockSet] = GetBasicBlocksForLoop(loop, Blocks);
+    if (bbToRegion.find(header) != bbToRegion.end())
+        region->setHeader(bbToRegion.at(header));    
+    else
+    {
+        printInternalError(convertFileName(__FILE__).c_str(), __LINE__);
+        return NULL;
+    }
+    
+    for (SAPFOR::BasicBlock* block : blockSet)
+        if (bbToRegion.find(block) != bbToRegion.end())
+            region->addBasickBlocks(bbToRegion.at(block));
+
+    for (LoopGraph* childLoop : loop->children)
+        region->addSubRegions(CreateSubRegion(childLoop, Blocks, bbToRegion));
+
+    return region;
+}
+
+Region::Region(LoopGraph* loop, const vector<SAPFOR::BasicBlock*>& Blocks)
+{
+    auto [header, blockSet] = GetBasicBlocksForLoop(loop, Blocks);
+    unordered_map<SAPFOR::BasicBlock*, Region*> bbToRegion;
+    for (auto poiner : blockSet)
+    {
+        bbToRegion[poiner] = new Region(*poiner);
+        this->basickBlocks.insert(bbToRegion[poiner]);
+        GetDefUseArray(poiner, loop, bbToRegion[poiner]->array_def, bbToRegion[poiner]->array_use);
+
+    }
+    this->header = bbToRegion[header];
+    SetConnections(bbToRegion, blockSet);
+    //create subRegions
+    for (LoopGraph* childLoop : loop->children)
+        subRegions.insert(CreateSubRegion(childLoop, Blocks, bbToRegion));
+}

src/PrivateAnalyzer/region.h

@@ -0,0 +1,60 @@
+#pragma once
+
+#include <vector>
+#include <map>
+#include <unordered_set>
+#include <string>
+
+#include "graph_loops.h"
+#include "../CFGraph/CFGraph.h"
+
+class Region : public SAPFOR::BasicBlock {
+public:
+    Region() { header = nullptr; }
+
+    Region(SAPFOR::BasicBlock block) : SAPFOR::BasicBlock::BasicBlock(block) { header = nullptr; }
+
+    Region(LoopGraph* loop, const std::vector<SAPFOR::BasicBlock*>& Blocks);
+
+    Region* getHeader() { return header; }
+
+    void setHeader(Region* region) { header = region; }
+
+    std::unordered_set<Region*>& getBasickBlocks() { return basickBlocks; }
+
+    void addBasickBlocks(Region* region) { basickBlocks.insert(region); }
+
+    const std::unordered_set<Region*>& getPrevRegions() { return prevRegions; }
+
+    std::unordered_set<Region*> getNextRegions() { return nextRegions; }
+
+    void addPrevRegion(Region* region) { prevRegions.insert(region); }
+
+    void addNextRegion(Region* region) { nextRegions.insert(region); }
+
+    void replaceInPrevRegions(Region* source, Region* destination)
+    {
+        prevRegions.erase(destination);
+        prevRegions.insert(source);
+    }
+
+    void replaceInNextRegions(Region* source, Region* destination)
+    {
+        nextRegions.erase(destination);
+        nextRegions.insert(source);
+    }
+
+    std::unordered_set<Region*> getSubRegions() { return subRegions; }
+
+    void addSubRegions(Region* region) { subRegions.insert(region); }
+
+    ArrayAccessingIndexes array_def, array_use, array_out, array_in, array_priv;
+
+private:
+    std::unordered_set<Region*> subRegions, basickBlocks;
+    /*next Region which is BB for current BB Region*/
+    std::unordered_set<Region*> nextRegions;
+    /*prev Regions which is BBs for current BB Region*/
+    std::unordered_set<Region*> prevRegions;
+    Region* header;
+};

src/ProjectManipulation/ConvertFiles.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <cstdio>
 #include <cstdlib>
@@ -6,9 +6,9 @@
 #include <string>
 #include <vector>
 
-#include "../Utils/errors.h"
-#include "../Utils/SgUtils.h"
-#include "../Utils/utils.h"
+#include "errors.h"
+#include "SgUtils.h"
+#include "utils.h"
 
 #include "../VerificationCode/verifications.h"
 

src/ProjectManipulation/FileInfo.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <cstdio>
 #include <cstdlib>
@@ -7,8 +7,8 @@
 #include <vector>
 
 #include "FileInfo.h"
-#include "../Utils/utils.h"
-#include "../Utils/errors.h"
+#include "utils.h"
+#include "errors.h"
 
 using namespace std;
 

src/ProjectManipulation/ParseFiles.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <cstdio>
 #include <cstdlib>
@@ -22,8 +22,8 @@
 #include <thread>
 #include <stack>
 
-#include "../Utils/errors.h"
-#include "../Utils/SgUtils.h"
+#include "errors.h"
+#include "SgUtils.h"
 #include "../VisualizerCalls/get_information.h"
 #include "../VisualizerCalls/SendMessage.h"
 
@@ -34,6 +34,7 @@
 using namespace std;
 
 extern "C" int parse_file(int argc, char* argv[], char* proj_name);
+extern const char* VISUALIZER_DATA_PATH;
 
 static void findModuleDeclInProject(const string& name, const vector<string>& files, map<string, string>& modDecls)
 {
@@ -443,20 +444,12 @@ static int dumpErrors(const vector<FileInfo>& listOfProject, const vector<string
         if (errors[z] == "")
         {
             FILE* ferr = fopen(file.errPath.c_str(), "w");
-            if (!ferr)
-                printInternalError(convertFileName(__FILE__).c_str(), __LINE__);
-            fclose(ferr);
+            if (ferr)
+                fclose(ferr);
             ++z;
             continue;
         }
 
-        FILE* ferr = fopen(file.errPath.c_str(), "w");
-        FILE* fout = fopen(file.outPath.c_str(), "w");
-        if (!ferr)
-            printInternalError(convertFileName(__FILE__).c_str(), __LINE__);
-        if (!fout)
-            printInternalError(convertFileName(__FILE__).c_str(), __LINE__);
-
         string errS = "", outS = "";
         vector<string> splited;
         splitString(errors[z], '\n', splited);
@@ -475,13 +468,22 @@ static int dumpErrors(const vector<FileInfo>& listOfProject, const vector<string
             }
         }
 
-        fprintf(fout, "%s", outS.c_str());
-        fprintf(ferr, "%s", errS.c_str());
+
+        FILE* ferr = fopen(file.errPath.c_str(), "w");
+        FILE* fout = fopen(file.outPath.c_str(), "w");
+        if (ferr)
+        {
+            fprintf(ferr, "%s", errS.c_str());
+            fclose(ferr);
+        }
+
+        if (fout)
+        {
+            fprintf(fout, "%s", outS.c_str());
+            fclose(fout);
+        }
 
         fflush(NULL);
-
-        fclose(fout);
-        fclose(ferr);
         ++z;
     }
 
@@ -713,7 +715,7 @@ int parseFiles(const char* proj, vector<string>& filesCompilationOrder, int pars
 
     if (pathSplit.size() < 2)
         printInternalError(convertFileName(__FILE__).c_str(), __LINE__);
-    if (pathSplit[pathSplit.size() - 2] != "visualiser_data")
+    if (pathSplit[pathSplit.size() - 2] != VISUALIZER_DATA_PATH)
         printInternalError(convertFileName(__FILE__).c_str(), __LINE__);
     string fullPath = "";
     for (int z = 0; z < pathSplit.size() - 2; ++z)
@@ -745,9 +747,9 @@ int parseFiles(const char* proj, vector<string>& filesCompilationOrder, int pars
         else
             fileNameFixed = (toAdd.substr(0, 2) == "./") ? toAdd.substr(2) : toAdd;
 
-        const string optPath = fullPath + "visualiser_data/options/" + fileNameFixed + ".opt";
-        const string errPath = fullPath + "visualiser_data/options/" + fileNameFixed + ".err";
-        const string outPath = fullPath + "visualiser_data/options/" + fileNameFixed + ".out";
+        const string optPath = fullPath + VISUALIZER_DATA_PATH  + "/options/" + fileNameFixed + ".opt";
+        const string errPath = fullPath + VISUALIZER_DATA_PATH  + "/options/" + fileNameFixed + ".err";
+        const string outPath = fullPath + VISUALIZER_DATA_PATH  + "/options/" + fileNameFixed + ".out";
 
         const string fileText = readFileToStr(toAdd);
 
@@ -809,6 +811,8 @@ void parseFiles(int argc, char** argv)
         printf("  run parsing for inlining\n");
 
     int rethrow = parseFiles(errors, listOfProject, filesCompilationOrder, isInline, true);
+    int errCount = dumpErrors(listOfProject, errors, messages);
+
     if (rethrow == 0)
     {
         for (auto& err : errors)
@@ -838,5 +842,7 @@ void parseFiles(int argc, char** argv)
     }
     else
         printf("Parsing was completed with errors, throw code %d, errors count %d\n", rethrow, code);
+
+    dumpMessages(false, messages, VISUALIZER_DATA_PATH);
     exit(0);
 }

src/ProjectManipulation/PerfAnalyzer.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <cstdio>
 #include <cstdlib>
@@ -6,8 +6,8 @@
 #include <string>
 #include <vector>
 
-#include "../Utils/errors.h"
-#include "../Utils/SgUtils.h"
+#include "errors.h"
+#include "SgUtils.h"
 
 #include "StdCapture.h"
 

src/ProjectParameters/projectParameters.cpp

@@ -1,3 +1,5 @@
+#include "leak_detector.h"
+
 #include <cstdio>
 #include <cstring>
 #include <fstream>
@@ -9,14 +11,15 @@
 #include <algorithm>
 #include <tuple>
 
-#include "../Utils/SgUtils.h"
-#include "../CFGraph/CFGraph.h"
+#include "CFGraph/CFGraph.h"
 #include "CFGraph/IR.h"
 #include "Distribution/Array.h"
 #include "dvm.h"
-#include "../Utils/errors.h"
-#include "../GraphCall/graph_calls.h"
-#include "../GraphCall/graph_calls_func.h"
+
+#include "errors.h"
+#include "SgUtils.h"
+#include "graph_calls.h"
+#include "graph_calls_func.h"
 
 #include "projectParameters.h"
 

src/SageAnalysisTool/defUse.cpp

@@ -4,9 +4,9 @@
 #include <map>
 #include <string>
 
-#include "../GraphCall/graph_calls.h"
-#include "../Utils/errors.h"
-#include "../Utils/utils.h"
+#include "graph_calls.h"
+#include "errors.h"
+#include "utils.h"
 #include "sage++user.h"
 #include "definesValues.h"
 #include "set.h"

src/SageAnalysisTool/depGraph.cpp

@@ -15,8 +15,8 @@ extern "C" void removeFromCollection(void *pointer);
 #endif
 extern int passDone;
 
-#include "../GraphCall/graph_calls.h"
-#include "../Utils/errors.h"
+#include "graph_calls.h"
+#include "errors.h"
 #include "../VisualizerCalls/get_information.h"
 
 #include "sage++user.h"

src/Sapfor.cpp

@@ -24,8 +24,6 @@
 #include "ParallelizationRegions/resolve_par_reg_conflicts.h"
 #include "ParallelizationRegions/expand_extract_reg.h"
 
-#include "Transformations/replace_dist_arrays_in_io.h"
-
 #include "Distribution/Distribution.h"
 #include "Distribution/GraphCSR.h"
 #include "Distribution/Arrays.h"
@@ -55,7 +53,8 @@
 #include "VerificationCode/verifications.h"
 #include "Distribution/CreateDistributionDirs.h"
 #include "PrivateAnalyzer/private_analyzer.h"
-#include "ExpressionTransform/expr_transform.h"
+#include "PrivateAnalyzer/private_arrays_search.h"
+#include "expr_transform.h"
 
 #include "Predictor/PredictScheme.h"
 #include "Predictor/PredictorModel.h"
@@ -71,24 +70,26 @@
 #include "VisualizerCalls/SendMessage.h"
 #include "VisualizerCalls/BuildGraph.h"
 
-#include "Transformations/enddo_loop_converter.h"
-#include "Transformations/loop_transform.h"
-#include "Transformations/array_assign_to_loop.h"
-#include "Transformations/private_arrays_resizing.h"
-#include "Transformations/loops_splitter.h"
-#include "Transformations/loops_combiner.h"
-#include "Transformations/loops_unrolling.h"
-#include "Transformations/uniq_call_chain_dup.h"
-#include "Transformations/checkpoints.h"
-#include "Transformations/swap_array_dims.h"
-#include "Transformations/function_purifying.h"
-#include "Transformations/private_removing.h"
-#include "Transformations/fix_common_blocks.h"
-#include "Transformations/convert_to_c.h"
-#include "Transformations/set_implicit_none.h"
-#include "Transformations/dead_code.h"
+#include "Transformations/ReplaceArraysInIO/replace_dist_arrays_in_io.h"
+#include "Transformations/LoopEndDoConverter/enddo_loop_converter.h"
+#include "Transformations/LoopNesting/loop_transform.h"
+#include "Transformations/VectorAssignToLoop/array_assign_to_loop.h"
+#include "Transformations/PrivateArrayResizing/private_arrays_resizing.h"
+#include "Transformations/LoopSplitting/loops_splitter.h"
+#include "Transformations/LoopCombining/loops_combiner.h"
+#include "Transformations/LoopUnrolling/loops_unrolling.h"
+#include "Transformations/FunctionDuplication/uniq_call_chain_dup.h"
+#include "Transformations/CheckPoints/checkpoints.h"
+#include "Transformations/ArrayDimsSwapping/swap_array_dims.h"
+#include "Transformations/FunctionPurifying/function_purifying.h"
+#include "Transformations/PrivateArrayRemoving/private_removing.h"
+#include "Transformations/GlobalVariables/fix_common_blocks.h"
+#include "Transformations/ConvertToC/convert_to_c.h"
+#include "Transformations/SetImplicitNone/set_implicit_none.h"
+#include "Transformations/DeadCodeRemoving/dead_code.h"
+#include "Transformations/RenameSymbols/rename_symbols.h"
+#include "Transformations/FunctionInlining/inliner.h"
 
-#include "RenameSymbols/rename_symbols.h"
 #include "ProjectParameters/projectParameters.h"
 
 #include "CFGraph/IR.h"
@@ -98,8 +99,6 @@
 #include "CFGraph/live_variable_analysis.h"
 #include "CFGraph/private_variables_analysis.h"
 
-#include "Inliner/inliner.h"
-
 #include "dvm.h"
 #include "Sapfor.h"
 #include "Utils/PassManager.h"
@@ -909,7 +908,7 @@ static bool runAnalysis(SgProject &project, const int curr_regime, const bool ne
         else if (curr_regime == ADD_TEMPL_TO_USE_ONLY)
             fixUseOnlyStmt(file, parallelRegions);
         else if (curr_regime == GCOV_PARSER)
-            parse_gcovfile(file, consoleMode == 1 ? file_name : "./visualiser_data/gcov/" + string(file_name), getObjectForFileFromMap(file_name, gCovInfo), keepFiles);        
+            parse_gcovfile(file, consoleMode == 1 ? file_name : string(VISUALIZER_DATA_PATH) + "/gcov/" + file_name, getObjectForFileFromMap(file_name, gCovInfo), keepFiles);
         else if(curr_regime == PRIVATE_ARRAYS_EXPANSION)
         {
             auto founded = loopGraph.find(file->filename());
@@ -961,7 +960,7 @@ static bool runAnalysis(SgProject &project, const int curr_regime, const bool ne
             vector<string> include_functions;
             
             createInterTree(file, getObjectForFileFromMap(file_name, intervals), removeNestedIntervals, getObjectForFileFromMap(file_name, SPF_messages));
-            assignCallsToFile(consoleMode == 1 ? file_name : "./visualiser_data/gcov/" + string(file_name), getObjectForFileFromMap(file_name, intervals));
+            assignCallsToFile(consoleMode == 1 ? file_name : string(VISUALIZER_DATA_PATH) + "/gcov/" + file_name, getObjectForFileFromMap(file_name, intervals));
             removeNodes(intervals_threshold, getObjectForFileFromMap(file_name, intervals), include_functions);
         }
         else if (curr_regime == INSERT_INTER_TREE)
@@ -1028,6 +1027,8 @@ static bool runAnalysis(SgProject &project, const int curr_regime, const bool ne
                 if(func->funcPointer->variant() != ENTRY_STAT)
                     countOfTransform += removeDeadCode(func->funcPointer, allFuncInfo, commonBlocks);
         }
+        else if (curr_regime == FIND_PRIVATE_ARRAYS)
+            FindPrivateArrays(loopGraph, fullIR);
         else if (curr_regime == TEST_PASS)
         {
         //test pass
@@ -1712,7 +1713,7 @@ static bool runAnalysis(SgProject &project, const int curr_regime, const bool ne
     }
     else if (curr_regime == GCOV_PARSER)
     {
-        parseTimesDvmStatisticFile((consoleMode == 1) ? string("statistic.txt") : "./visualiser_data/statistic/" + string("statistic.txt"), intervals);
+        parseTimesDvmStatisticFile((consoleMode == 1) ? string("statistic.txt") : string(VISUALIZER_DATA_PATH) + "/statistic/statistic.txt", intervals);
 
         //fixed count, devide by value from PROG_HEDR
         SgStatement* mainUnit = findMainUnit(&project, SPF_messages);
@@ -2662,32 +2663,12 @@ int main(int argc, char **argv)
         printStackTrace();
         printf("exception occurred\n");
         
-        json byFileArray = json::array();
-        for (auto& byFile : SPF_messages)
-        {
-            json inFile;
-            inFile["file"] = byFile.first;
-
-            json messages = json::array();
-            for (auto& message : byFile.second)
-            {
-                message.print(byFile.first);
-                messages.push_back(message.toJson());
-            }
-            inFile["messages"] = messages;
-            byFileArray.push_back(inFile);
-        }
-        json allMessages;
-        allMessages["allMessage"] = byFileArray;
-
-        FILE* outF = fopen("dump_messages.json", "w");
-        fprintf(outF, "%s", allMessages.dump().c_str());
-        fclose(outF);        
+        dumpMessages(true, SPF_messages, VISUALIZER_DATA_PATH);
     }
+    dumpMessages(false, SPF_messages, VISUALIZER_DATA_PATH);
 
     deleteAllAllocatedData(withDel);
 
-
 #if _WIN32 && _DEBUG
     if (leakMemDump)
     {

src/Sapfor.h

@@ -183,6 +183,8 @@ enum passes {
     SET_IMPLICIT_NONE,
     RENAME_INLCUDES,
 
+    FIND_PRIVATE_ARRAYS,
+
     TEST_PASS,
     EMPTY_PASS
 };
@@ -367,6 +369,7 @@ static void setPassValues()
     passNames[SET_IMPLICIT_NONE] = "SET_IMPLICIT_NONE";
     passNames[RENAME_INLCUDES] = "RENAME_INLCUDES";
     passNames[INSERT_NO_DISTR_FLAGS_FROM_GUI] = "INSERT_NO_DISTR_FLAGS_FROM_GUI";
+    passNames[FIND_PRIVATE_ARRAYS] = "FIND_PRIVATE_ARRAYS";
 
     passNames[TEST_PASS] = "TEST_PASS";
 }

src/SapforData.h

@@ -49,6 +49,7 @@ bool withTemplateInfo = false;
 bool inlcudeAllFiles = false; // for pass INSERT_INLCUDES
 bool runAsClient = false; // run console project as client for Visualizer
 bool printSymbTable = false;
+const char* VISUALIZER_DATA_PATH = "visualiser_data";
 
 uint64_t currentAvailMemory = 0;
 int QUALITY; // quality of conflicts search in graph

src/Transformations/ArrayDimsSwapping/swap_array_dims.cpp

@@ -11,9 +11,9 @@
 #include "../Distribution/Array.h"
 #include "dvm.h"
 
-#include "../Utils/errors.h"
-#include "../Utils/utils.h"
-#include "../Utils/SgUtils.h"
+#include "errors.h"
+#include "utils.h"
+#include "SgUtils.h"
 
 using namespace std;
 

src/Transformations/CheckPoints/checkpoints.cpp

@@ -1,12 +1,12 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <vector>
 #include <string>
 #include <set>
 
-#include "../Utils/SgUtils.h"
-#include "../Utils/utils.h"
-#include "../ExpressionTransform/expr_transform.h"
+#include "SgUtils.h"
+#include "utils.h"
+#include "expr_transform.h"
 
 #include "checkpoints.h"
 

src/Transformations/ConvertToC/convert_to_c.cpp

@@ -1,4 +1,4 @@
-#include "../Utils/leak_detector.h"
+#include "leak_detector.h"
 
 #include <cstdio>
 #include <cstring>